Online resources and materials

Contacts

Superusers

Dr. Petra Bolte

Tel. +49 441 798 3478

Dr. Vita Solovyeva

Tel. +49 441 798 3547

General email
 

 

W4 0-081 (Huygens)

W4-0-066 (Amira)

 

Online resources and materials

Guidelines how to report your microscopy data in publications:

  1. A guide to accurate reporting in digital image acquisition – can anyone replicate your microscopy data? Heddleston, J.M., Aaron, J.S., Khuon, S., Chew, T.-L. (2021)J. Cell Sci. doi: 10.1242/jcs.254144,(https://is.gd/kVisb4)
  2. A guide to accurate reporting in digital image processing – can anyone reproduce your quantitative analysis? Aaron, J.S., Chew, T.-L. (2021) J. Cell Sci. doi:10.1242/jcs.254151,(https://is.gd/PlGrnz)

Books:

  1. Handbook of Biological Confocal Microscopy 
  2. Bioimage Data Analysis
  3. Fundamentals of Light Microscopy and Electronic Imaging

Tutorials and papers:

  1. "Tutorial: guidance for quantitative confocal microscopy" Nature Protocols volume 15, pages1585–1611(2020).  DOI: 10.1038/s41596-020-0313-9
  2. Neubias getaway 
  3. Intro videos of OiVM - Optical Imaging & Vital Microscopy

Online courses:

  1. List of online courses: https://www.gerbi-gmb.de/onlinetraining
  2. Microcourses: background knowledge
  3. Bioimage analysis course Lecture BioImage Analysis 2020

Image analysis:

  1. Neubias Academy
  2. Youtube channel of Neubias with webinars
  3. Amira online hands-on
  4. Huygens webinars
  5. Image analysis forum, where you can ask disturbing questions: https://forum.image.sc
  6. Reproducible image handling and analysis Kota Miura and Simon F Nørrelykke. https://www.embopress.org/doi/full/10.15252/embj.2020105889

Microscopy forums:

  1. https://www.microlist.org

Fluorophores list:

  1. Fluorophores list http://www.fluorophores.tugraz.at/substance/
  2. Another Fluorophores list https://searchlight.semrock.com
  3. List of dyes and filter match http://www.spectra.arizona.edu (enable flash player)
  4. https://www.chroma.com/spectra-viewer

Online materials provided by microscope companies

  1. Nikon  www.microscopyu.com
  2. Olympus https://www.olympus-lifescience.com/en/microscope-resource/
  3. Leica https://www.leica-microsystems.com/science-lab/
  4. Zeiss http://zeiss-campus.magnet.fsu.edu/index.html
(Stand: 09.06.2021)