Scientific technical support:
Prof. Dr. Oliver Zielinski


Dr. Holger Winkler

Research cruise SO-248

Research cruise BacGeoPac May 1st 2016

SO-248 „BacGeoPac“ May 1st 2016 (Auckland, Neuseeland) – June 3rd 2016 (Dutch Harbor, Alaska, USA)

1. Cruise Report (apr 28, 2016 – may 2, 2016)

RV Sonne seen from Sky Tower Auckland     RV Sonne in the harbour of Auckland

By April 29th , all scientific members of the research cruise SO248 „BacGeoPac“ had arrived safely and with all baggage in Auckland, New Zealand, and boarded Research Vessel (RV) Sonne. All equipment, shipped in containers over seas and as air fright to Auckland, was already on board, so that the voyage could start in time on May 1st . Vanguards of the scientific party had been on board already on April 28th and 29th to discuss issues with the captain and his crew and to install several instruments. So the scientific party, consisting of 40 members from six research institutes and seven countries was in a good mood and full of expectations when they left the harbour of Auckland, situated wonderfully close to the city centre, on May 1st and started steaming towards station 1 at 30°S. They expect to reach this location on May 3rd. The research cruise will go all the way to the subarctic Bering sea at 60°N and end in Dutch Harbor, the largest harbour of the Aleutian Ilands on the island Unalaska.

The scientists will investigate on this research expedition along a transect around 180° latitude, besides the hydrography and biooptics of the water, the composition and significance of the bacterial communities and the dissolved organic nutrients in the various climatic regions of the Pacific, the so-called biogeographic provinces. These provinces differ with respect to the water temperature, the salinity, nutrients and the composition of the phytoplankton and zooplankton and, according to recent preliminary research , also with respect to the composition of the bacterial communities and the dissolved organic matter, the major bacterial nutrients. Detailed investigations on the latter points, however, are still missing. Accordingly, bacteria from the deep ocean and the sea floor are still scarcely studied. Therefore, hydrographers, bioopticians, geochemists and microbiologists with greatly different expertise are joining forces and will carry out first investigations of such intensities which are mainly focused on microorganisms.

These investigations require processing of large volumes of water on board. Therefore, the Institute for Chemistry and Biology of the Marine Environment (ICBM) of the Carl von Ossietzky University of Oldenburg, the home institute of RV Sonne, acquired and constructed a large volume CTD rosette (24x20 liter Niskin-bottles). We are most happy on board to have this CTD because otherwise we could not carry out the work we had planned in the anticipated times.

The installation of the labs has proceeded quite a bit and first plannings for station work and
coordination with captain Lutz Mallon and his crew took already place. He and his crew are most
cooperative and helpful, such that we are most confident, to be supported excellently during the
cruise in any way and regarding all affairs on board.

Meinhard Simon on behalf of the scientific party and crew on board.

2nd Cruise report (May 2 to 9, 2016)

After one week cruising since the departure from Auckland we arrived meanwhile at station 4 at 10° 30’ S and 176° 30’ W, far away from all continents and islands in the middle of the central Pacific. We steamed east of the Fidji Islands and thereafter in sight of the Island of Futuna, belonging to French Polynesia. This was the last view on land for the next two and a half weeks, because until we reach the Aleutian Islands the only islands in the greater vicinity of our cruise track is the Hawaiian archipelago, still around 1000 nautical miles away.

The journey so far was without any problems and we sampled four stations. One of the stations we wanted to visit, located in the exclusive economic zone of the Fidji Islands, had to be cancelled because despite an application in time we did not obtain any response from the Fidji authorities. Hence we had to cancel one of the stations at every fifth degree latitude we had planned to visit until the equator, that at 20°S. So we had roughly two and a half days steaming time and crossed a storm of Beaufort scale 8 and waves of 4-6 m height in the region of the south east trade winds. Sonne was still pretty stable in the water, thanks to the stabilizers. The water temperature increased quite a bit since station 1, from 23°C to 30°C at station 4. The air temperature is similarly high and the humidity as well. Thanks to the well air-conditioned ship it is quite comfortable on board. The water is already very clear since the first station. Our biooptics group of Daniela Voss measures at every station the transparency of the water by the so-called Secchi depth with a white disc of a diameter of 90 cm. Therefore, the disc is lowered into the water column until it cannot be seen any more. This was the case at all stations only at depths of 40 and even 50 m.

At our first station at 30°S we tested very successfully all instruments for collecting samples in the water column. We were particularly happy that the new large-volume CTD rosette worked without any problems right away. Prior to the cruise there was time only for a quick check of its functionality in the Jade Bay. It already proved its most valuable usefulness at every sampling. I would like to express my deep thanks to Thomas Badewien and his team for the thoughtful and excellent work at designing and constructing this important core instrument for oceanographic work. Due to the large amount of water of the 24 bottles of a volume of 20 liter each we obtain so much water in one “shallow” (down to 1000 m depth) and one “deep” (down to the sea floor at more than 4000 m and further on even down to 6000 m) cast that so far we can fulfill all water requests, even those of the very “thirsty” groups on board. Only now and then we need to run an extra CTD to fulfil special requests for extra large amounts of water.

Also towing a plankton net at the surface with twin nets (Bongo net) worked at the first try. Using this net one group on board wants to collect microplastic at the surface and to study its abundance and microbial colonization. However, so far the water is so clear and pristine that no single piece of plastic was trapped in the net.

At station 2 at 25°S we tested very successfully the new multicorer (MUC) to sample surface sediment. All plastic tubes were filled with brown, soft sediment. Unfortunately, one of the eight tubes including its fixation did not return on deck so that Bert Engelen and his team need to continue working with seven tubes to investigate the bacterial communities in the sediment. The first data show that in the deep sea sediments of the tropical Pacific below 4000 m much fewer bacteria strive as compared to other sea floors. Further analyses after this cruise will show which bacteria are present.

All station work is supported excellently and in a very cooperative way by captain Lutz Mallon and his crew. One or another technical problem in the laboratories and with instruments was fixed rapidly so that all our instruments and equipment and the infrastructure on board were always ready to use and hopefully will continue to be.

For preparing and planning the station work and to learn more about the various projects which are being conducted by the different groups on board meetings and short presentations take place in the evening in the very suitable conference room. These meetings may even lead to new cooperations atwhich the groups did not even think of when preparing the cruise and which may lead to  interesting additions of the research program.

According to the plan we will have one more station at 5°S before we come to the equator at 0°S or N on May 12 th at 180°E or W and will have a 24 hour time series station.

With best regards from the remote tropical Pacific on behalf of the scientific party and crew on board,

Meinhard Simon

3rd Cruise report (May 9 to 16, 2016)

In the late evening of May 11 th we arrived at the most prominent station of our long transect: the equator at the date line (0° N/S, 180° W/E), our station 6. Before we had sampled successfully station 5 at 5° S, 178° 19,0‘ W. At the equator we had a 24 hour station and two nautical miles before we had the accompanying MUC station. By several indications we noticed that we met the nutrient-rich upwelling region of the equatorial current. The current velocity from east to west was up to 2 kn and showed impressively how strongly pronounced this current is. In addition, the deep chlorophyll maximum, the depth in which the phytoplankton, in this case blue green cyanobacteria, are mainly concentrated, was at 60 m in contrast to 90-110 m further south in the tropical south Pacific. Further, in sediment samples diatom frustules could be seen under the microscope.

The work of the microbiologists in the upper 1000 m of the water column and of the geochemists is part of projects in the frame work of the Collaborative Research Center (CRC) “Ecology, Physiology and Molecular Biology of the Roseobacter group: towards a system biology understanding of a globally important group of marine bacteria” ( The overarching goal of this CRC is to understand the evolutionary, genetic and physiological principles of this important group of marine bacteria. During this cruise this group of bacteria is in the special focus of the microbiological investigations.

The main goal of the station at the equator was to study the day-night cycle of the bacterial communities and the dissolved organic nutrients available to them. Therefore a CTD was run down to at least 300 m every three hours from 6 am on May 12 th until 6 am on May 13 th and several depths down to at least 100 m were sampled. The microbiologists on board filtered out of these samples bacteria and froze them at -80°C to later analyze in the home labs how the phylogenetic composition of the bacterial communities, their metabolic activities and gene expression pattern change during day and night. In addition, these samples served to assess directly on board the bacterial abundance, biomass production, growth rate and turnover rate of dissolved amino acids and glucose and the hydrolysis rate of polysaccharides. When these samples will have been analyzed in several days we will have right on board first results on the day night rhythm of the cycling of matter of the bacterial communities. These results will help to even better plan and carry out a similar 24 hour time series in the northern Pacific. The geochemists and bioopticians took samples during the 24 hour time series to assess them later on with respect to the dissolved organic nutrients.

The mentioned parameters are analyzed at every station down to a depth of 300 m and at selected stations down to 1000 m. In addition samples are collected to analyze inorganic nutrients, dissolved amino acids and carbohydrates, dissolved organic matter (DOM), chlorophyll and particulate organic carbon, as biogeochemical background information. Therefore, the main activity of the microbiologists on board is to filter water which takes at least several hours after each station. One group on board needs very much water to investigate population genomics of specific subgroups of the Roseobacter group and therefore uses a so-called in situ pump. This pump is used usually at every other station and lowered to the desired depth, usually 60 m, on a wire and pumps seawater computer-controlled usually for three hours. Thereafter, the pump is brought on board again, the filters with the concentrated bacteria removed and frozen at -80°C.

To examine how the bacterial communities respond to changing nutrient conditions so-called mesocosm experiments are conducted. Therefore, 20 liter-carboys are filled with seawater. One series is supplemented with secretion products of diatoms, another with distinct polysaccharides and a third one with vitamin B12. The mesocosms are subsampled for six days, the samples processed in the same way as those of the profiles at the stations so that we later can analyze how the bacterial communities responded to these different nutrient conditions. This enables us to infer how the bacterial community composition is controlled by the different conditions and to better understand the data of our station profiles. The mesocosm experiments are conducted at three stations. The experiment at station 2 is finished, a second experimental series started yesterday at station 5 at 3° 30’ N and the third series willbe conducted at appr. 40° N where we expect to meet the phytoplankton spring bloom of the north Pacific.

At the station at the equator and during the intense work over the 24 hours we still found enough time to document our visit at this very special location appropriately by photos. On Whitsunday we steamed all day to arrive at our next station at 11° N on Monday at 2 am. Therefore we had enough time to celebrate this holiday appropriately by a barbecue in the hangar and on the working deck. The dinner was excellent. On behalf of the scientists I would like to thank the cook Andreas Spindler and his crew for this exquisite barbecue but also for the delicious daily meals.

With best regards on behalf of the scientists,

Meinhard Simon

4th Cruise report (May 16 to 23, 2016)

After cruising through the tropical and subtropical regions of the Pacific we reached the temperate zone at 37°N on May 23 rd . The water temperature is only 16°C and the air temperature even only 12°C. From a European perspective one would not expect such low temperatures in these latitudes, but in the Pacific the influence of the temperate and subarctic zone without any barrier to the Arctic is effective much further south. We investigated a station at every 6 th degree latitude, always alternating between a shallow one down to 1000 m and a deep one down to the bottom. On May 22 nd the shallow station 12 was visited. The water color already indicated that the water is less transparent than in the tropics. The transparency measured by the Secchi disc was only 14 m and no deep chlorophyll maximum existed. The towed Bongo net contained for the first time radiolarians and many crustacean zooplankton, a clear indication of the higher productivity in these latitudes. Further, quite a few plastic particles were trapped as well, a clear sign of civilization and presumably a hint to the large amounts of plastic in the north Pacific central gyre. Indications of this much more productive area were discernable since the day before yesterday, as more pelagic birds occurred, mainly petrels and albatrosses and on May 21 st also the first wales were spotted, mainly mink wales.

The occurrence of plastic particles at the surface and their colonization by animals and microorganisms is one of the topics of the group on board from the University of Vienna. Its leader, Prof. Gerhard Herndl, is not on board but well represented by his senior research associate Thomas Reinthaler, who, together with five colleagues, carries out the work on board. The main question of this group is to investigate the carbon cycle in the deep ocean and the identification of the prokaryotes involved, mainly Archaea. Because quite a few of them are able to fix CO 2 , i.e. live autotrophically, they measure in water samples from below the illuminated near surface layer how much CO 2 is fixed. Further, they study how fast, or more precisely how slow the prokaryote grow in the deep ocean, how much biomass they produce and which significance these processes have for the carbon cycle in the oceans. The processes in the deep ocean are much slower than in the near surface layer due to the low temperature, the scarcity of nutrients and the fact that much fewer microorganisms dwell in these depths. However, one should not underestimate the significance of these processes simply because of the enormous range of the deep oceans. In a related project they investigate whether the Archaea can use urea to meet their carbon demand at least partially. In a pilot project dissolved proteins are isolated from the deep sea for a later identification. Therefore the proteins are concentrated from 480 liters of sea water, which takes two days. As the abundance of microorganisms in the deep ocean is lower than in the near surface ocean by at least a factor of 10, in depths below 3000 m up to a factor of 100, the Vienna group requires large amounts of water, for the mentioned analyses 1000 L and for several experiments between 240 and 480 L, equivalent to half or all bottles of one CTD cast. Thanks to the large volume bottles this demand of water is no problem and so far all water wishes were fulfilled. Below 2000 m the prokaryotes obviously are adapted to the high pressure which, however, may inhibit their growth at atmospheric pressure at the surface, causing technical problems for measurements at atmospheric pressure. Therefore, at one station the growth of the prokaryotes was measured in a special incubator in 2000 m depth by deploying it fixed at a steel wire for eight hours at this depth. The data of this experiment are still being processed.

Meanwhile every scientist is well acquainted with all rooms and spots on board. The last missing areas of the ship to become acquainted with were the facilities in the lower decks where the engine and power unit, the winch room, the drinking water processing facilities and the sewage treatment system are located. The chief engineer, Achim Schüler, gave a very interesting and competent guided tour through these catacombs of the ship which remain unnoticed when the ship is steaming and the scientists are working. It became clear to everybody that for the smooth operations and the most complex requirements of this research vessel a technical team is on duty which is very well familiar with all facilities on the lower decks. Smaller or larger technical problems, which occur again and again, are solved and fixed such that the scientific work on board is affected not at all. On behalf of the scientists I would like to thank Achim Schüler and his team very much for his unnoticed but most valuable commitment.

With best regards on behalf of the scientists,

Meinhard Simon

5th Cruise report (May 23 to 30, 2016)

In the evening of May 27th we left the Pacific proper and steamed through the chain of the Aleutian Islands into the Bering Sea. We were lucky and able to see with binoculars in a distance of 40 nautical miles at a fair visibility three of the snow covered islands. Before, we had visited between May 23rd and 27th stations 13 to 16 at 40°, 45°, 47,5° and at 50°N again a 40-hour time series station, at which the in situ incubator of the Vienna group was exposed again. The sea surface temperature decreased further. At 40°N it was 10°C and at 45°N only 6°C and now in the Bering Sea it is around 4-5°C. When writing this report, we are at station 18 and 57°N, 179° 35’E. Yesterday we visited the first station in the Bering Sea, station 17, still on the Aleutian crest and therefore only 770 m depth. The sky is cloud-covered since days but it stayed dry. It is impressive to experience here locally how cold the Pacific is in the geographically temperate zone; understandably giving the name subarctic Pacific due to this feature . When the warming effect of the Gulf Stream is missing, like in Europe, the influence of the Arctic stretches, though, fairly far south.

All stations north of 34°N exhibited a relatively high productivity of the phytoplankton, measured as chlorophyll fluorescence, as compared to the nutrient depleted stations further south. In addition, the Bongo net tows contained large amounts of zooplankton, but only few plastic particles. The biomass production of the bacteria in the upper 100 m of the water column, however, strongly decreased with decreasing temperature further north, presumably due to the low temperature as bacterial nutrients are abundant here. In contrast, bacterial numbers in the upper 100 m of the water column strongly increased, from less than half a million to more than 2 million per milliliter. Further analyses will show why the cell numbers increased that much towards colder temperatures. In the surface sediment samples collected by the MUC cell numbers increased as well, presumably also a consequence of the higher productivity of the subarctic Pacific relative to regions located further south. The color of the sediment in the north is much more brownish, pointing to a higher content of organic matter and indicating that a higher proportion of the material reaches the sea floor. The sediment in the Bering Sea at station 18 is even olive green, presumably due to large amounts of settled and little degraded phytoplankton. An unexpected finding for the entire transect from the tropics to the Subarctic is the well pronounced oxygen minimum at depths between 300 and below 1000 m, partly with minima of only 10-20% of the near-surface values. In the Bering Sea it appears to be well pronounced as well.

This will be the last weekly report of our cruise SO248, as it ends next Friday, June 3rd, in Dutch Harbor, the most important fishing harbor of the Aleutian Islands on the island Unalaska. Ahead of us is only the northern most station 19 at 58° 54‘ N, 179° 20‘ E tomorrow. Both deep stations in the Bering Sea are of great interest to us because the 3900 m deep basin of the Bering Sea is well separated from and exhibit only little water exchange with the Pacific. After the station tomorrow we just need to process the last samples and then will pack all material and stow it into the boxes and containers for shipping them back to Germany and Auckland. Finally all laboratories will be cleaned. A considerable part of the material will be used again on cruise SO254 from January 29th to March 1st, 2017. This cruise will start again in Auckland and ends there and has 60°S as the southernmost location. During cruise SO254 we will continue this transect to the south such that we cover in total a transect from 60°S to almost 60°N. Thus we encompass all biogeographic provinces of the Pacific from the subantarctic to the subarctic regions and will obtain a most comprehensive insight into the composition and metabolic potential of the bacterial communities in these provinces.

At all work on deck and using winches and instruments like the CTD, MUC, the in situ pump, the profiler, and the in situ incubator, Torsten Bierstetd and his team always supported us in a most helpful way and very competent. Without their help we would not have brought any instrument into the water. Therefore I would like to thank very much Torsten Bierstedt and his team for their great commitment and their support at any time during day and night.

At the end of this cruise we will have made appr. 6500 nautical miles and, regarding the distance, one of the longest cruises with RC Sonne. Even though the cruise is not yet over and we have still a few days to go I would like on behalf of all scientist to thank very much all members of the crew for their in every respect outstanding support of our work available at any time. This is true particularly for the captain, Lutz Mallon, who, with his quiet and easy-going manner, directs the vessel most competently through all stormy and otherwise difficult conditions.

With best regards and a farewell on behalf of the scientists,

Meinhard Simon.

Blog Posts from the "SONNE"

FS Sonne – ICBM auf See

  • On the track of deep-sea sponges…

    Hello dear SONNE friends!

    Today’s blog entry is about the work of Prof. Dr. Gert Wörheide.
    The following report was written by Gert Wörheide. He is a professor at the Ludwig-Maximilians-University (LMU) Munich and one of the sponge experts here on board of the R/V SONNE.

    Prof. Dr. Gert Wörheide is taking samples in the wet lab of the R/V SONNE


    Today it is time to report something about the work of the sponge team, which busily investigates the diversity of deep-sea sponges using the ROV KIEL6000. But what is the first question once a new sponge comes into focus and later lands on deck? What species is this? And here I come into the game!

    I am a Professor at the Department of Earth and Environmental Sciences at the Ludwig-Maximilians-Universität (LMU) München and a specialist for the so-called “DNA Barcoding” and molecular taxonomy and systematics of sponges. I am here on board as a member of the “sponge team” led by Prof. Peter Schupp of the ICMB, and my task is to identify the collected sponges using molecular methods.

    But stop, can sponges not be identified readily from pictures? No, not really. A few species can be, but the vast majority of sponges can only be identified by experts, based on skeletal features – a long and tedious process…

    To find a way to shorten the process of sponge species identification, some colleagues and myself initiated in 2006 the “Sponge Barcoding Project“, which aims at identifying sponges based on so-called “Barcoding” sequences. These “Barcoding” sequences are sequences of species-specific gene fragments from the mitochondrial, and for sponges often also the nuclear, genomes that are species specific and can be used to identify species. Using these DNA Barcodes, larger collections from biodiversity surveys such as this one, with more than 400 collected samples, can relatively quickly be identified to ansqwer questions about the biodiversity of the sampled habitats. DNA sequences also have the advantage that phylogenetic relationships can be estimated by comparative sequence analyses, so we can learn a lot more about the evolution of the deep-sea sponge communities, for a better understanding of the deep-sea ecosystem as a whole.

    My task here on board is to subsample each sponge (but also octocorals and echinoderms) and preserve three of these subsamples using different chemicals, such as RNAlater and nearly pure Ethanol. Doing so enables subsequent molecular studies, besides DNA barcoding also further in-depth transcriptomic and genomic studies. All these analyses will be carried out by my team and myself back home in the lab in Munich, to unlock the secrets of the deep-sea sponges…

    The sponge team led by Prof. Dr. Peter Schupp (LTR: Dr. Jackson Cahn, Klaus Peter Conrad, Lars-Erik Petersen, Dr. Sven Rohde, Prof. Dr. Gert Wörheide, Prof. Dr. Peter Schupp, Dr. Dennis Versluis, Tessa Clemens, Tanja Stratmann, Kathrin Busch, Sadie Mills). Besides identification, research focusses mainly on physiology and chemistry of sponges and their associated microbes.

  • Tierische Freunde der SONNE

    Hallo liebe Freunde der SONNE!

    Es wird mal wieder Zeit, hier kommt nun ein weiteres Update über die Expedition SO254.

    Ein Großteil der Forschungsfahrt ist geschafft – mittlerweile befinden wir uns wieder in nördlicheren Gewässern nahe der Ostküste von Neuseeland. Die Fahrt in Richtung 60°S an den Nordrand des Südpolarmeeres war begleitet von schlechtem Wetter und starkem Seegang, wir mussten sogar die Schutzklappen der Bullaugen unserer Kabinen und Labore verschließen. Wellen von bis zu über fünf Metern Höhe waren nicht unüblich und so wurde entschieden, nach zwei CTD-Stationen bei 50° und 52°S die Fahrt in Richtung Süden abzubrechen und nach Norden umzukehren.

    Ein junger Wanderalbatros besucht die SONNE. Diese Art brütet auf subantarktischen Inseln und erreicht eine Flügelspannweite von über drei Metern (Foto von Klaus Peter Conrad)

    Trotz des schlechten Wetters waren wir auf dem Ozean keinesfalls alleine! Viele Tage über begleiteten uns zahleiche Albatrosse die dem Wind und den Wellen trotzten und über die stürmische See flogen. Eine Besonderheit dabei war, dass neben dem Königsalbatros auch mehrere Wanderalbatrosse sowie Sootie-Albatrosse (Dunkelalbatrosse) gesichtet wurden.

    In den ruhigeren Gewässern, weiter im Norden, hatten wir in den letzten Tagen noch mehr tierische Besucher. Eine Schule von Hector-Delfinen (übrigens einer der kleinsten Vertreter der Delfine und ausschließlich in den Gewässern um Neuseeland verbreitet) folgte der SONNE und untersuchte das Kiel ROV6000 beim Auftauchvorgang etwas genauer. Neben den Delfinen, die uns alle mit ihren akrobatischen Sprüngen begeisterten und gleichzeitig frustrierten (da man nur mit viel Glück und Geduld ein gutes Foto bekam…), schwamm auch eine Robbe ganz relaxt eine Weile neben dem Schiff.

    Ein Hector-Delfin bei einem seiner akrobatischen Sprünge (Foto von Klaus Peter Conrad)
    Die relaxte Robbe (Foto von Klaus Peter Conrad)

    Die letzten Tage der Forschungsreise liegen dann noch einmal ganz im Zeichen der Schwämme. An verschiedenen Stationen nahe der Ostküste Neuseelands wird das ROV Kiel6000 erneut zum Meeresboden abtauchen, um viele dieser benthischen Invertebraten für uns zu sammeln.

    Und am Ende: WO ist die SONNE?

    In diesem Sinne,
    Euer Wissenschafts-Team von SO254

  • Fascinating seafloor

    Ahoy, dear SONNE friends!

    Another day, another blog entry!
    The following report was written by Marion Pohlner and Julius Degenhardt. The two scientists of the ICBM Oldenburg are from the research group Paleomicrobiology led by Prof. Dr. Heribert Cypionka.

    Marion and Julius are using the MUC (multicorer) to take sediment samples from the seafloor


    We are Julius Degenhardt and Marion Pohlner and today, we provide some insight into our research aboard R/V SONNE. We are scientists based at the ICBM Oldenburg and our work focuses on the seafloor.

    In order to investigate the seafloor in more detail, we recovered samples from 5000 m water depth during this cruise. This was achieved this with a piece of kit called multicorer (MUC). On station, our MUC disappears for up to four hours in the deep blue sea. Once it reaches the seafloor, the coring tubes penetrate about 30 cm into the sediment. Two lids close the core tubes so that the sediment is well-trapped for the journey to the surface. In theory, this is very simple. Sometimes it is however challenging to recover sediments with the MUC depending on the properties of the seafloor which change from station to station. If the seafloor is too hard it can happen that the MUC comes back on deck with empty tubes…or huge ferromanganese nodules!

    Once on deck, the sediments are recovered from the tubes and subsampled with sterile syringes from different depths. The samples are analyzed either directly on board or packed for shipping and analysis in our home lab at the ICBM. For instance, we identify the composition of the microbial community and the amount of bacteria within the sediment. Our bacteria cells are as small as 1-2 micrometers. Thanks to a particularly specific dye we are able to count such small bacteria cells. At the seafloor, we counted about 300 million cells per cubic centimeter. Twenty centimeters below the surface this number reduced to only three million.

    Moreover, we analyze the enzymatic activity of bacteria. Enzymes breakup nutrients hosted by the sediment so that they become available for consumption by bacteria. As the temperature at the seafloor is around 4°C our analyses are carried out in the cold room.

    But it’s not just the MUC recovering seafloor sediments. At some stations we also receive sample material from the ROV. Such sediments are mostly used to isolate yet unknown seafloor bacteria. Once the bacteria are isolated (i.e., only one species) we are able to investigate the nutrient consumption and the role of the bacterium at the seafloor in our home lab.

    (Translation by Torben Struve)

  • About microbiomes, public deep-sea viewing and breakfast…

    Hello dear SONNE friends

    It’s time again for a new blog entry! The following lines will provide an insight into the daily schedule of Kathrin Busch onboard R/V SONNE.

    But first of all: Kathrin is a PhD student at GEOMAR Helmholtz Center for Ocean Research Kiel where she is working in the research unit ‘Marine Microbiology’ led by Prof. Dr. Ute Hentschel Humeida. The unit is partner of the EU-project SponGES, specifically focusing on deep-sea sponges of the North Atlantic. Here onboard the SONNE, marine biologist and deep-sea ecologist Kathrin is part of the sponge team led by Prof. Dr. Peter Schupp.

    Kathrin Busch is taking the Niskin bottles (water samples) from ROV Kiel6000.

    Kathrin is interested in the microbiomes of different deep-sea sponges. A microbiome is the entity of microbes colonizing a particular organism, i.e., in Kathrin’s case this is a huge variety of bacteria associated with sponges. With her research she aims to provide a biogeographical comparison between different ecological zones. More specifically, she wants to unravel whether or not the bacterial communities between individual sponges in different biogeographical zones are different. Therefore, the Kiel-based researcher and her colleagues collect sponges from a wide range of biogeographical zones in the deep Pacific, Atlantic and even the Arctic Ocean!

    Fair enough. But how does Kathrin’s regular working day onboard the SONNE look like?

    „Breakfast first…“ (personal communication Kathrin Busch, R/V SONNE, 2017) – it follows an amazing waiting time when the ROV Kiel6000 (remotely operated vehicle, a deep-sea diving robot) is descending into the abyss to collect samples. During this time, marine biologist Kathrin is amazed following the action at the seafloor live and in HD onboard R/V SONNE where the individual organisms and their habitat are protocoled thoroughly. Once the ROV is back on deck with all the precious samples (often in the evening hours) Kathrin takes some pieces of each individual sponge and preserves them for analysis in her home lab. Besides the sponge samples, she also needs water and sediment samples in order to check whether or not the identified bacteria are associated with the respective sponge or simply from ambient water and/or sediment.

    Often, several birds can be killed here with one stone as the ROV Kiel6000 can be equipped to collect sponge, water and sediment samples. Faaaaantastic! However, sometimes the available space onboard ROV Kiel6000 is occupied by other pieces of kit so that only sponge samples can be collected. Less fantastic (!), as Kathrin’s work then depends on the successful collection of sediment and water samples with the MUC (Multicorer to recover sediments) and the CTD rosette (conductivity-temperature-pressure [depth] sensors with a rosette of 24 bottles á 20 L), respectively. This means that she has to work long hours as both operations are often carried out at night and the water samples need to be filtrated, too!

    As you can see, there’s plenty of work onboard R/V SONNE! We hope with this brief feature you could get an idea of Kathrin’s day-to-day work.

    And in the end: Where is the SONNE?

    With this in mind,

    Your science party of SO254

    (Translation by Torben Struve)

  • 1,500 leagues above the sea…

    It’s time again for a new blog entry about our expedition SO254.

    Meanwhile, we finished station 11 out of 22 and are located at 41° 6,930‘ S and 179° 50,104 W. Since the start of the research cruise in Auckland on the 28.01.2017, we steamed already more than 1500 nautical miles, i.e., nearly 2,900 km! This distance is equivalent to driving the Bundesautobahn 7 three times from the very North all the way to southernmost Germany.

    The SONNE is steaming on calm seas – and has alreay passed 1,500 nautical miles!

    After we experienced cozy 22 °C at the beginning of the expedition (Southern Hemisphere summer is from November to March…), the temperature is now dropping significantly during our southwards journey. While steaming with about 12 knots towards subantarctic waters, we still have blue sky though with air temperatures at 14 °C and water at 18 °C.

    So far, the ocean treated us pretty well. Only in the last few days the boat started shaking. It is however remarkable how stable the SONNE passes through rough seas. Hence, the scientific workforce had not yet to suffer from any downtime so that we keep doing our work with enthusiasm and a fair amount of scientific curiosity.

    Speaking of fair amounts. The galley staff and the stewards of the SONNE are doing an amazing job! Every single day, we are looking forward to the breakfast buffet with a great selection of fresh fruits, a tasty and variable lunch (also for vegetarians!) and a rich dinner. There is something here for everyone and for my part, I am glad that my handheld scale has a maximum capacity of no more than 50 kg.

    The next blog entry with a more scientific focus will follow soon to keep the balance!

    And in the end: Where is the SONNE?

    With this in mind,

    Your science party of SO254

    (Translation by Torben Struve)

  • On zooplankton and small bacteria…

    Hello dear SONNE friends,

    Today we are portraying Dr. Heike Freese and Franziska Klann from the Leibniz Institute DSMZ in Braunschweig. The two scientists are part of the collaborative Research Center  (SFB, Sonderforschungsbereich) “Roseobacter” and together they are the team “population genomics” on board.

    Their interest focuses on a specific family of bacteria, the rhodobacteraceae. More specifically, the Roseobacter group! This group of marine bacteria is abundant and often dominant in almost all marine ecosystems and plays an important role in the Earth’s biogeochemical cycles. The work of Heike and Franziska revolves around the evolutionary radiation among different species within various genera of the Rroseobacter group. They want to learn how different species may evolve within this group of marine bacteria and why they are so successful adapting to their ecological niches.

    In order to collect the small and, as colonies, slightly reddish bacteria, adequate sampling strategy and techniques are crucial.

    What does that mean?

    This means that Heike and Franziska collect zooplankton with a very fine-meshed net in the upper 150 m of the water column, because the bacteria thrive within and on the zooplankton. As soon as the net is filled with zooplankton, the associated bacteria are isolated in the lab at 15 °C (…Brrr!). In the home lab, they will carry out further work, keyword: genome differentiation.

    Besides the net, the two biologists use an in-situ pump. During three hours of operation this pump filters about 250 to 300 liters of seawater in 20 m water depth to collect free-living bacteria on a filter. Meanwhile Heike and Franziska keep their fingers crossed that their pump performs well and resists the water pressure. After a successful operation, the micro-organisms on the filter are deep frozen and kept until further genomic analysis in the lab at home.

    Their work keeps them really busy here and we hope you could get an idea of what Heike and Franziska are doing during SO254.

    Stay tuned – more to follow soon!

    And in the end: Where is the SONNE?

    With this in mind,

    The science party of SO254

    (Translation by Torben Struve)

(Changed: 2021-02-24)