Ilias Patmanidis
Ilias Patmanidis
Ilias Patmanidis
Background:
2015-2019: Ph.D. in Computational Chemistry at the University of Groningen
2020-2022: Post-doc in Molecular Dynamics group at the University of Groningen
2022-2023: Post-doc in Biomodelling group at the Aarhus University
Research interest:
My main expertise lies on all-atom simulations, coarse-grained models, force field optimisation and small molecule parameterization, and my research interests could be summarised as simulating properties of nanomaterials and different biomolecules. At the QuantumBio group, I am contributing in the development of the VIKING suite (an online platform for computational modelling), and I am supporting the group on projects that require multi-scale modelling approaches.
Publications
Watching Molecular Nanotubes Self-Assemble in Real Time, , Journal of the American Chemical Society, 145, 22494-22503, (2023)
Modelling structural properties of cyanine dye nanotubes at coarse-grained level, , Nanoscale Advances, 4, 3033-3042, (2022)
Martini 3: a general purpose force field for coarse-grained molecular dynamics, , Nature Medicine, 18, 382-388, (2021)
Martini 3 Coarse-Grained Force Field: Small Molecules, , Advanced Theory and Simulations, 5, 2100391, (2021)
Structural characterization of supramolecular hollow nanotubes with atomistic simulations and SAXS, , Physical Chemistry - Chemical Physics, 22, 21083-21093, (2020)